about
I am a PhD student in Bioinformatics at the University of Manchester, part of the ELLIS PhD programme, working in collaboration with AstraZeneca. My research focuses on integrating machine learning and statistical methods for spatial multi-omic analysis.
I hold an MSc in Bioinformatics and Systems Biology from Gebze Technical University and a BSc in Molecular Biology and Genetics from Istanbul Medeniyet University. My expertise includes genomics, spatial omics, and structural biology, and I am proficient in multiple programming languages for large-scale bioinformatics data analysis. My work has contributed to algorithm development for viral surveillance, drug discovery, and sustainable agriculture, leading to multiple high-impact publications in journals like Nature Biotechnology and Briefings in Bioinformatics.
Beyond research, I am an Executive Board Member of the Asia Pacific Bioinformatics Network (APBioNET) and actively contribute to bioinformatics education and training. I co-authored the Grand Challenges in Bioinformatics Education and Training paper and regularly serve as a coordinator and trainer for global initiatives. I am committed to advancing the field through scientific contributions, education, and community-driven initiatives.
What I do!
Professional Experience
• PhD Student, University of Manchester & AstraZeneca, 2024 – Present
• Executive Board Member, APBioNET, 2024 – Present
• Coordinator, Bioinformatics Grand Challenges Consortium (BGCC), 2021 – Present
• Research Assistant, Bezmialem Vakif University, 2021 – Present
• Co-founder, BioTechX, 2023 – 2024
Education
• PhD in Bioinformatics – University of Manchester, 2024 – Present
Supervisors: Magnus Rattray, Mauricio Alvarez, Sokratia Georgika
• MSc in Bioinformatics & Systems Biology – Gebze Technical University, 2020 – 2023
Supervisor: Onur Serçinoğlu
• BSc in Molecular Biology & Genetics – Istanbul Medeniyet University, 2016 – 2020
Publications (Selected)
• “A global initiative on addressing bioinformatics’ grand challenges.”, 2024, Briefings in Bioinformatics
doi.org/10.1093/bib/bbae278
• “Unraveling the ligand specificity and promiscuity of the Staphylococcus aureus NorA efflux pump: a computational study.” 2024, Journal of Biomolecular Structure and Dynamics,
doi.org/10.1080/07391102.2024.
2326670
• “Grand challenges in bioinformatics education and training.” 2023, Nature Biotechnology,
doi.org/10.1038/s41587-023-01891-9
• “Identification of Genetic Alterations in Rapid Progressive Glioblastoma by Use of Whole Exome Sequencing.” 2023,.
doi.org/10.3390/diagnostics
13061017
Fellowships & Grants
• Scientific and Technological Research Council of Turkey (TUBITAK) Head of Department of Science Fellowships and Grant Programs (BIDEB) Scholarship. 2020 – 2022.
• James Taylor Fellowship for Galaxy Community Conference 2021 (GCC2021). 2021
• Scientific and Technological Research Council of Turkey (TUBITAK, TEYDEB 1512), Development of Machine Learning-Based Genetic Analysis Platform for Sustainable Agriculture, Identification number: 2220415, 2023-2024
• Travel Fellowship, Global Organization of Bioinformatics Learning, Education and Training (GOBLET), May 2024
Research Interests
• Bioinformatics & Computational Biology
• Genomics & Proteomics
• Machine Learning for Biomedical Data
• Spatial Omics & Structural Biology